Fedor Kouzine: search on Z-Library

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1

Global Regulation of Promoter Melting in Naive Lymphocytes

Kouzine, Fedor, Wojtowicz, Damian, Yamane, Arito, Resch, Wolfgang, Kieffer-Kwon, Kyong-Rim, Bandle, Russell, Nelson, Steevenson, Nakahashi, Hirotaka, Awasthi, Parirokh, Feigenbaum, Lionel, Menoni, Her

Journal:

Year:

2013

Language:

english

File:

PDF, 2.42 MB

english, 2013

2

Supercoil-driven DNA structures regulate genetic transactions

Journal:

Frontiers in Bioscience

Year:

2007

Language:

english

File:

PDF, 299 KB

english, 2007

3

The functional response of upstream DNA to dynamic supercoiling in vivo

Kouzine, Fedor, Sanford, Suzanne, Elisha-Feil, Zichrini, Levens, David

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 574 KB

english, 2008

4

The dynamic response of upstream DNA to transcription-generated torsional stress

Kouzine, Fedor, Liu, Juhong, Sanford, Suzanne, Chung, Hye-Jung, Levens, David

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.23 MB

english, 2004

5

The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c-myc expression

Elisha-Feil, Zichrini, Weber, Achim, Zhao, Keji, Levens, David, Liu, Juhong, Kouzine, Fedor, Nie, Zuqin, Chung, Hye-Jung

Journal:

The EMBO Journal

Year:

2006

Language:

english

File:

PDF, 332 KB

english, 2006

6

The importance of being supercoiled: How DNA mechanics regulate dynamic processes

Laura Baranello, David Levens, Ashutosh Gupta, Fedor Kouzine

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2012

Language:

english

File:

PDF, 765 KB

english, 2012

7

Transcription-dependent dynamic supercoiling is a short-range genomic force

Kouzine, Fedor, Gupta, Ashutosh, Baranello, Laura, Wojtowicz, Damian, Ben-Aissa, Khadija, Liu, Juhong, Przytycka, Teresa M, Levens, David

Journal:

Nature Structural and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 914 KB

english, 2013

8

DNA Topoisomerases

Baranello, Laura, Kouzine, Fedor, Levens, David

Journal:

Year:

2013

Language:

english

File:

PDF, 845 KB

english, 2013

9

DNA topology and transcription

Kouzine, Fedor, Levens, David, Baranello, Laura

Journal:

Nucleus (Landes Bioscience)

Year:

2014

Language:

english

File:

PDF, 751 KB

english, 2014

10

DNA Break Mapping Reveals Topoisomerase II Activity Genome-Wide

Baranello, Laura, Kouzine, Fedor, Wojtowicz, Damian, Cui, Kairong, Przytycka, Teresa, Zhao, Keji, Levens, David

Journal:

International Journal of Molecular Sciences

Year:

2014

Language:

english

File:

PDF, 783 KB

english, 2014

11

ChIP bias as a function of cross-linking time

Baranello, Laura, Kouzine, Fedor, Sanford, Suzanne, Levens, David

Journal:

Chromosome Research

Year:

2016

Language:

english

File:

PDF, 2.10 MB

english, 2016

12

Controlling gene expression by DNA mechanics: emerging insights and challenges

Levens, David, Baranello, Laura, Kouzine, Fedor

Journal:

Biophysical Reviews

Year:

2016

Language:

english

File:

PDF, 781 KB

english, 2016

13

Genome scale patterns of supercoiling in a bacterial chromosome

Lal, Avantika, Dhar, Amlanjyoti, Trostel, Andrei, Kouzine, Fedor, Seshasayee, Aswin S. N., Adhya, Sankar

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

14

Controlling gene expression by DNA mechanics: emerging insights and challenges

Levens, David, Baranello, Laura, Kouzine, Fedor

Journal:

Biophysical Reviews

Year:

2016

Language:

english

File:

PDF, 782 KB

english, 2016

15

Single Molecule Visualization of Topology-Mediated Interactions in Supercoiled DNA

Scott, Shane, Ming Xu, Zhi, Kouzine, Fedor, Berard, Daniel, Shaheen, Cynthia, Saunders, Laura, Gravel, Barbara, Leroux, Catherine, Cayen-Cyr, Christopher, Levens, David, Benham, Craig, Leslie, Sabrina

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

16

Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome

Kouzine, Fedor, Wojtowicz, Damian, Baranello, Laura, Yamane, Arito, Nelson, Steevenson, Resch, Wolfgang, Kieffer-Kwon, Kyong-Rim, Benham, Craig J., Casellas, Rafael, Przytycka, Teresa M., Levens, Davi

Journal:

Year:

2017

Language:

english

File:

PDF, 3.37 MB

english, 2017

17

Visualizing structure-mediated interactions in supercoiled DNA molecules

Scott, Shane, Xu, Zhi Ming, Kouzine, Fedor, Berard, Daniel J, Shaheen, Cynthia, Gravel, Barbara, Saunders, Laura, Hofkirchner, Alexander, Leroux, Catherine, Laurin, Jill, Levens, David, Benham, Craig

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.09 MB

english, 2018

18

The Role of DNA Topology and Conformation in Gene Regulation, In Vivo

Levens, David, Kouzine, Fedor, Baranello, Laura F.

Journal:

Biophysical Journal

Year:

2018

File:

PDF, 39 KB

2018

19

The Role of DNA Topology and Conformation in Gene Regulation, In Vivo

Levens, David, Kouzine, Fedor, Baranello, Laura F.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 39 KB

english, 2018

20

Single-molecule visualization of the effects of ionic strength and crowding on structure-mediated interactions in supercoiled DNA molecules

Scott, Shane, Shaheen, Cynthia, McGuinness, Brendon, Metera, Kimberly, Kouzine, Fedor, Levens, David, Benham, Craig J, Leslie, Sabrina

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 983 KB

english, 2019

21

Single-molecule visualization of the effects of ionic strength and crowding on structure-mediated interactions in supercoiled DNA molecules

Scott, Shane, Shaheen, Cynthia, McGuinness, Brendon, Metera, Kimberly, Kouzine, Fedor, Levens, David, Benham, Craig J, Leslie, Sabrina

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 983 KB

2019